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BEGIN:VEVENT
DTSTAMP:20260829T215514Z
UID:c3759365-a37f-4731-b91f-d0ddc9a89153
DTSTART:20231128T080000Z
DTEND:20231130T160000Z
DESCRIPTION:Educators:\nPavlos Bekiaris\, Axel von Kamp\, Steffen Klamt (MP
 I Magdeburg)\, Frank T. Bergmann\, Ursula Kummer (Heidelberg  University)\
 , Wolfgang Müller\, Maja Rey\, Andreas Weidemann\, Ulrike Wittig (HITS) (
 de.NBI-SysBio)\n\nDate:\n28. - 30 Nov 2023\n\nLocation:\nMPI Magdeburg\, S
 andtorstrasse 1\, 39106 Magdeburg\, Germany\n\nContents:\nKey concepts of 
 stoichiometric and kinetic modeling of biochemical networks:\n- stoichiome
 tric matrix and stoichiometric networks\n- steady state flux distributions
 \n- principles of constraint-based modeling\n- metabolic flux analysis and
  flux optimization (flux balance analysis)\n- metabolic pathway analysis w
 ith elementary flux modes\n- metabolic network design via minimal cut sets
 \n- simulation of dynamic (kinetic) models\n- sensitivity analysis\n- carr
 ying out parameter estimation tasks\n- model exchange using SBML\nData and
  model management:\n- manual/programmatic access to reaction kinetics data
  from SABIO-RK\n- storage and exchange of data and models using FAIRDOMHub
 /SEEK\n- modeling specific functionalities in FAIRDOMHub/SEEK\n \nLearning
  goals:\nDuring this 3-day course\, attendees will learn basic techniques 
 for modeling of biochemical networks including data access and storage due
  to the FAIR principles. The first day introduces principles of stoichiome
 tric and constraint-based modeling coupled with hands on exercises using C
 ellNetAnalyzer and a demonstration of CNApy. The second day continues with
  kinetic modeling techniques which will be illustrated and exercised with 
 COPASI. The third day SABIO-RK is used as a resource for kinetic data and 
 FAIRDOM Hub/SEEK is introduced as a data and model management platform fit
 ted to the needs of systems biologists. The hands on exercises throughout 
 the three days will ensure that attendees become familiar with the softwar
 e tools and with analyzing\, creating\, editing\, importing\, simulating a
 nd storing biochemical networks.\n\nPrerequisites:\nSome knowledge of math
 ematical modeling will be advantageous.\nThe participants should bring the
 ir own laptop with MATLAB installed (if you do not have MATLAB please let 
 us know during registration so we can send you information on how to obtai
 n a trial license).\n\nKeywords:\nCellNetAnalyzer (CNA)\, COPASI\, SBML\, 
 FAIR\, modeling\, kinetic data access\, database\, data and model manageme
 nt\n\nTools:\nCellNetAnalyzer\, COPASI\, Matlab\, SABIO-RK\, FAIRDOMHub/SE
 EK
LOCATION:MPI Magdeburg\,  Sandtorstraße
SUMMARY:Tools for Systems biology modeling and data exchange: CellNetAnalyz
 er\, COPASI\, SABIO-RK\, FAIRDOMHub/SEEK 2023
URL;VALUE=URI:https://www.denbi.de/training/1600-tools-for-systems-biology-
 modeling-and-data-exchange-cellnetanalyzer-copasi-sabio-rk-fairdomhub-seek
 -2023
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