Materials - PaN Training

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- Scientific topic
- R150
- R program150
- R script150
- Genome annotation140
- Exomes119
- Genomes119
- Genomics119
- Personal genomics119
- Synthetic genomics119
- Viral genomics119
- Whole genomes119
- Comparative transcriptomics114
- Transcriptome114
- Transcriptomics114
- MicroRNA sequencing109
- RNA sequencing109
- RNA-Seq109
- RNA-Seq analysis109
- Small RNA sequencing109
- Small RNA-Seq109
- Small-Seq109
- Transcriptome profiling109
- WTSS109
- Whole transcriptome shotgun sequencing109
- miRNA-seq109
- Chromosome walking97
- Clone verification97
- DNA-Seq97
- DNase-Seq97
- High throughput sequencing97
- High-throughput sequencing97
- NGS97
- NGS data analysis97
- Next gen sequencing97
- Next generation sequencing97
- Panels97
- Primer walking97
- Sanger sequencing97
- Sequencing97
- Targeted next-generation sequencing panels97
- Data management74
- Metadata management74
- Python74
- Python program74
- Python script74
- Research data management (RDM)74
- py74
- Bayesian methods73
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- Gaussian processes73
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- Markov processes73
- Multivariate statistics73
- Probabilistic graphical model73
- Probability73
- Statistics73
- Statistics and probability73
- FAIR data63
- Findable, accessible, interoperable, reusable data63
- Active learning60
- Ensembl learning60
- Kernel methods60
- Knowledge representation60
- Machine learning60
- Neural networks60
- Recommender system60
- Reinforcement learning60
- Supervised learning60
- Unsupervised learning60
- Single-cell genomics58
- Single-cell sequencing58
- Data rendering47
- Data visualisation47
- Breakend assembly38
- Genome assembly38
- Genomic assembly38
- Sequence assembly (genome assembly)38
- Variant pattern analysis37
- Functional genome annotation33
- Metagenome annotation33
- Structural genome annotation33
- Pipelines27
- Software integration27
- Tool integration27
- Tool interoperability27
- Workflows27
- Metagenomics25
- Shotgun metagenomics25
- Cloud computing19
- Computer science19
- HPC19
- High performance computing19
- High-performance computing19
- Antimicrobial stewardship17
- Medical microbiology17
- Microbial genetics17
- Microbial physiology17
- Microbial surveillance17
- Microbiological surveillance17
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- Operation
- Data handling8
- File handling8
- File processing8
- Processing8
- Report handling8
- Utility operation8
- Data extraction6
- Data retrieval6
- Data retrieval (metadata)6
- Metadata retrieval6
- Retrieval6
- Database retrieval5
- Query5
- Query and retrieval5
- Database search4
- Search4
- Normalisation3
- Standardisation3
- Standardisation and normalisation3
- Design2
- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Data formatting1
- Data reformatting1
- Data visualisation1
- Exome variant detection1
- File format conversion1
- File formatting1
- File reformatting1
- Format conversion1
- Genome variant detection1
- Germ line variant calling1
- Molecular visualisation1
- Mutation detection1
- Ontology browsing1
- Ontology visualisation1
- Plotting1
- Quality control1
- Read pre-processing1
- Rendering1
- Sequence read pre-processing1
- Somatic variant calling1
- Validation1
- Variant calling1
- Variant mapping1
- Visualisation1
- de novo mutation detection1
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- Tool
- V-pipe2
- ViralZone2
- Cellosaurus1
- GlyConnect1
- ISMARA1
- nextstrain.org1
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- Standard database or policy
- Ontology Lookup Service2
- Cellosaurus1
- ModelArchive1
- PRoteomics IDEntifications database1
- Resource Identification Portal 1
- The European Genome-phenome Archive1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
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- Content provider
- Glittr.org816
- ERGA Knowledge Hub128
- SIB Swiss Institute of Bioinformatics111
- BY-COVID25
- ELIXIR2
- GOBLET1
- IFB French Institute of Bioinformatics1
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- Keyword
- R298
- Python121
- Genomics119
- Transcriptomics115
- Next generation sequencing113
- RNA-seq110
- Data management74
- Statistics74
- Data science63
- Machine learning61
- Unix/Linux60
- Single-cell sequencing59
- FAIR data58
- Reproducibility57
- Variant analysis48
- Version control48
- Data visualization47
- Genome assembly39
- General36
- Genome annotation34
- training30
- Long read sequencing26
- Metagenomics26
- Workflows26
- Containerization22
- High performance computing21
- Shiny21
- Spatial transcriptomics21
- FAIR20
- Docker18
- Microbiology18
- Nextflow18
- Artificial intelligence17
- Comparative genomics17
- ChIP-seq16
- Image analysis14
- Quarto14
- Epigenetics13
- Galaxy13
- Pathways and Networks13
- ATAC-seq12
- Clinical data11
- Enrichment analysis11
- Rmarkdown11
- Cloud computing10
- Julia10
- Proteomics10
- Singularity10
- Snakemake10
- genes and genomes10
- Epidemiology9
- FAIRsharing9
- Knowledge graph9
- Multiomics9
- Population genetics9
- SPARQL9
- databases9
- policies9
- reproducibility9
- standards9
- Database Management8
- Ontology8
- RDF8
- Science Communication8
- medicine and health8
- Large language models7
- data management7
- next generation sequencing7
- programming7
- ABS6
- Data submission6
- Interoperability6
- Quality Control6
- biostatistics6
- data visualisation6
- services and resources6
- Assembly Evaluation5
- CWL5
- Citizen Science5
- Educational resources5
- Metabolomics5
- Nagoya5
- Phylogenetics / Phylogenomics5
- Query data5
- SARS-CoV-25
- alan bridge group5
- torsten schwede & thierry sengstag group5
- Open Science4
- SQL4
- Standards4
- basic research4
- environmental science4
- infectious disease4
- mark ibberson group4
- Data mining3
- GNU Make3
- GraphDB3
- Java3
- SNOMED CT3
- Semantic Framework3
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- Competency level
- Not specified976
- Beginner87
- Intermediate19
- Advanced3
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- Licence
- License Not Specified658
- Creative Commons Attribution 4.0 International141
- MIT License100
- Creative Commons Attribution Share Alike 4.0 International65
- GNU General Public License v3.0 only45
- Creative Commons Zero v1.0 Universal31
- BSD 3-Clause "New" or "Revised" License14
- Apache License 2.013
- Creative Commons Attribution Non Commercial Share Alike 4.0 International6
- Creative Commons Attribution Non Commercial 4.0 International3
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- Do What The F*ck You Want To Public License1
- The Unlicense1
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- Target audience
- Bioinformaticians15
- Data Managers12
- Data Scientists12
- Research Scientists12
- Biomedical Researchers11
- Bench biologists5
- Researchers5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists4
- Laboratory technicians4
- Veterinarians4
- Biologists with little or no prior computational experience3
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Ontologists2
- Trainers2
- Training Designers2
- Training instructors2
- bioinformaticians2
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone who wants to become a good trainer or teacher1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Biologists, Genomicists, Computer Scientists1
- Biomedical researchers1
- Clinical Scientists1
- Clinicians1
- Data Scientist1
- Data managers1
- Data stewards1
- Graduate Students1
- Life Science Researchers1
- Life science researchers who are new to high performance computing1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Operators, developers and managers of bioinformatics resources1
- PhD students1
- Research scientists1
- Researcher in life sciences1
- Students1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- beginner bioinformaticians1
- biocurators1
- post-docs1
- statisticians1
- teachers1
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- Author
- SIB Swiss Institute of Bioinformatics108
- The Carpentries Incubator52
- bioinformatics.ca35
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- The Gulbenkian Training Programme in Bioinformatics19
- UC Davis Bioinformatics Core Training Page18
- Data Carpentry17
- Teaching materials at the Harvard Chan Bioinformatics Core17
- posit::conf(2024)17
- Wandrille Duchemin15
- CRUK CI Bioinformatics Core13
- Monique Zahn13
- Personalized Health Informatics Group12
- Canadian Bioinformatics Workshops10
- Fred Hutch Data Science Lab10
- Geert van Geest10
- ELIXIR Estonia9
- rstudio::conf(2022)9
- Sundeep Agarwal8
- Biocore@CRG7
- Bioinformatics, Rockefeller University7
- BU-ISCIII6
- Philippe Le Mercier6
- Robin Engler6
- Sergio Martínez Cuesta6
- Software Carpentry6
- VIB Training & Conferences6
- Vasundra Touré6
- Deepak Tanwar5
- ELIXIR Europe Training5
- Hadley Wickham5
- Marie-Claude Blatter5
- MolSSI Education5
- The Carpentries Lab5
- Thuong Van Du Tran5
- cambiotraining5
- jhudsl5
- Alex's Lemonade Stand Foundation4
- BioNT Training4
- Computational Biology and Bioinformatics at UCLouvain4
- Elisabeth Gasteiger4
- Frédéric Burdet4
- Grégoire Rossier4
- Health Data Science Sandbox4
- Institut Français de Bioinformatique (IFB)4
- Markus Müller4
- RStudio4
- Rami Krispin4
- Ted Laderas4
- Vassilios Ioannidis4
- Waldron Lab at the CUNY SPH4
- coderefinery4
- Boas Pucker3
- C. Li3
- Joana Carlevaro3
- Joana Carlevaro Fita3
- Julien Roux3
- Lukas Weber3
- Mark Robinson3
- Philippe Lemercier3
- R Programming @ University of Cincinnati3
- RStudio Education3
- Rafael A Irizarry3
- Richard McElreath3
- Roger D. Peng3
- Sydney Informatics Hub3
- VIB Technologies: Training material and software projects3
- VIB Training & Conferences Program3
- Aedin Culhane2
- Allen Downey2
- Ana-Claudia Sima2
- Antonello Lobianco2
- BiGCaT, Department of Translational Genomics2
- Bioconductor2
- Bradley Boehmke2
- Bruno Rodrigues2
- Cloud-SPAN2
- Daniele Silvestro2
- David Dalpiaz2
- Davis Laboratory2
- Deepak Unni2
- ELIXIR-Norway Training2
- Emil Hvitfeldt2
- Firas Zemzem2
- Heinz Stockinger2
- Jake Vanderplas2
- James W. MacDonald2
- Jennifer (Jenny) Bryan2
- Jessica Lindvall2
- Joao Lourenço2
- Jose A Dianes2
- JuliaAcademy2
- Leiden Computational Biology Center2
- Marc Robinson-Rechavi2
- Martin Emons2
- Martin J Frigaard2
- Master of Environmental Data Science (MEDS) program2
- Melbourne Bioinformatics2
- Met Office2
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- Contributor
- Toby Hodges81
- François Michonneau68
- Erin Becker62
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Katrin Leinweber53
- Tracy Teal53
- Raniere Silva52
- W. Trevor King51
- maneesha51
- Andy Boughton50
- Katie Anne Mills47
- Maxim Belkin47
- Canadian Bioinformatics Workshops43
- David Pérez-Suárez43
- Gabriel A. Devenyi43
- Abby Cabunoc Mayes41
- EvanWill41
- Ian Lee41
- Jon Pipitone41
- Jonah Duckles41
- Michael Hansen41
- Piotr Banaszkiewicz41
- Brandon Curtis40
- David Mawdsley40
- Greg Wilson40
- Jemma Stachelek40
- Remi Rampin40
- Allen Lee39
- Andrew Sanchez39
- Michael R. Crusoe39
- James Allen38
- Jeff Oliver38
- Joel Nothman38
- Nick Young38
- Rémi Emonet38
- naught10138
- Rayna M Harris37
- William L. Close37
- Sarah Brown35
- Gerard Capes33
- Renato Alves30
- trk30
- Ana Conrado29
- Stephan Druskat29
- Christina K.28
- K.E. Koziar28
- Alex Whan27
- Paula Andrea Martinez26
- Michael Joseph25
- Anthony Gitter24
- Geert van Geest24
- João Rodrigues24
- Robert Davey22
- Sarah Stevens22
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- The Gulbenkian Training Programme in Bioinformatics19
- Paola Prieto18
- C. Titus Brown17
- Aaron O'Leary16
- Annajiat Alim Rasel16
- Benson Muite16
- Will Gammerdinger16
- Hannah Lyman15
- Mark Fernandes15
- Meeta Mistry15
- Radhika Khetani15
- Trevor Bekolay15
- Bianca Peterson14
- Candace Savonen14
- John Blischak14
- Carrie Wright13
- Karen Word13
- Lex Nederbragt13
- Wolmar Nyberg Åkerström13
- jhudsl-robot13
- zhibinlu13
- Andrew Reid12
- Ethan White12
- JCSzamosi12
- Laurent Gatto12
- Mateusz Kuzak12
- Stéphane Guillou12
- Ariel Rokem11
- Hugo Tavares11
- Ivan Gonzalez11
- Jihe Liu11
- Karen Cranston11
- Kate Isaac11
- Kilian Lieret11
- Miguel Cardoso11
- Niclas Jareborg11
- Pete11
- Radovan Bast11
- Trevor Keller11
- Wandrille D.11
- Yihui Xie11
- Amy Brown10
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- Resource type
- e-learning19
- Video13
- E-learning8
- Training materials8
- Mock data3
- E-Learning2
- Computer Software1
- Lecture1
- Presentation1
- Toolkit1
- Training materials with mock data1
- ViralZone1
- workflow1
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- Node
- Switzerland
- EMBL-EBI515
- United Kingdom121
- Netherlands85
- Germany79
- Belgium51
- France38
- Portugal30
- Czech Republic29
- Estonia22
- Spain19
- Finland18
- Sweden17
- Cyprus16
- Slovenia16
- Norway11
- Luxembourg9
- Italy7
- Denmark5
- Greece4
- Israel1
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- Collection
- Elements of Data Management5
- SARS-CoV-2 : Studying a new virus5
- PINK project4
- ELIXIR Biodiversity Community1
- HemaFAIR Training: Applying FAIR Principles in Hematology Research1
- Impact of research infrastructures1
- VIP138 SLOT Online Terbaik saat ini di Indonesia1
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- Active32
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