Materials - PaN Training

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- Algorithms54
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- Galaxy367
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- FASTX-Toolkit8
- FreeBayes8
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- BamTools7
- msConvert7
- Biopython6
- Flye6
- HISAT26
- MAFFT6
- MaxQuant6
- Open Babel6
- Trim Galore6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- seqtk6
- DESeq25
- Galactic Circos5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- RStudio5
- SRA Software Toolkit5
- anndata5
- annotatemyids5
- compute_sequence_length5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Diamond4
- GOseq4
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- MACS4
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- Merqury4
- Newick Utilities4
- Salmon4
- StringTie4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- gffcompare4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- UCSC Genome Browser Utilities3
- Vcflib3
- dRep3
- export2graphlan3
- gfastats3
- humann3
- iqtree3
- lofreq3
- pyGenomeTracks3
- snippy3
- Bio3D2
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- PRoteomics IDEntifications database1
- The Observational Medical Outcomes Partnership Common Data Model1
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- Keyword
- jupyter-notebook53
- Foundations of Data Science52
- biodiversity47
- Statistics and machine learning44
- Single Cell42
- microgalaxy42
- Proteomics36
- Genome Annotation31
- Ecology30
- Microbiome30
- Transcriptomics30
- Using Galaxy and Managing your Data28
- Assembly25
- FAIR Data, Workflows, and Research24
- metagenomics22
- Imaging20
- Variant Analysis19
- Earth Data science17
- fair17
- FAIR principles16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- interactive-tools16
- jbrowse116
- prokaryote16
- work-in-progress16
- gmod15
- Epigenetics13
- Open Science13
- Sequence analysis12
- assembly12
- earth-system12
- paper-replication12
- European research projects11
- MIGHTS11
- Metabolomics11
- Metadata11
- Research Data Management11
- covid1911
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- Evolution10
- Image segmentation10
- cyoa10
- data stewardship10
- eukaryote10
- metabolomics10
- nanopore10
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- 10x9
- DDA9
- Visualisation9
- ai-ml9
- elixir9
- label-free9
- ocean9
- one-health9
- Computational chemistry8
- Data reuse8
- workflows8
- EBV dataset7
- EBV workflow7
- collections7
- dmp7
- ecology7
- español7
- metabarcoding7
- Digital Humanities6
- Overlay6
- R6
- SQL6
- data management6
- deutsch6
- illumina6
- italiano6
- mouse6
- ro-crate6
- transcriptomics6
- 16S5
- HELIOS5
- Large Language Model5
- Rare Diseases5
- bacteria5
- deconvolution5
- label-TMT115
- metatranscriptomics5
- rmarkdown-notebook5
- taxonomic profiling5
- virology5
- Bioimaging4
- Conversion4
- DIA4
- Data management4
- FAIR4
- FAIR Data4
- Healthcare4
- Multi-channel image4
- Object feature extraction4
- Python4
- QC4
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- Competency level
- Beginner434
- Intermediate115
- Not specified22
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- Licence
- Creative Commons Attribution 4.0 International579
- MIT License3
- Creative Commons Zero v1.0 Universal1
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- Target audience
- Students
- PhD students194
- Clinicians128
- Galaxy Administrators113
- Researchers89
- PaN Community63
- Instructors52
- Biologists45
- Life Science Researchers44
- Novice44
- PaN users36
- bioinformaticians35
- Bioinformaticians33
- Scientific community30
- Intermediate26
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- PhD candidates23
- Biologists, Genomicists, Computer Scientists22
- scientists22
- Data stewards21
- beamtime users, researchers, PhD students21
- life scientists20
- post-docs20
- Bench biologists19
- Scientists19
- Data Managers18
- Academia/ Research Institution17
- Industry17
- Non-Profit Organisation17
- Beginners16
- Data Scientist16
- Data Scientists16
- Data managers16
- Graduate Students16
- PhD Students16
- Trainers16
- researchers16
- ExPaNDS and PaNOSC project members15
- Post-Doctoral Fellows15
- beginner bioinformaticians15
- Healthcare14
- Researcher in life sciences13
- data stewards13
- Research Scientists12
- data managers12
- Biomedical Researchers11
- Computational biologists11
- Master students11
- biocurators11
- biologists11
- software developers, bioinformaticians11
- health professionals10
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- beamline users10
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- modelers7
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- Health Care Professionals6
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- Materials scientists6
- engineers6
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- General Interest5
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- Patient Advocates 5
- Undergraduate students5
- archaeologists5
- computational scientists5
- crystallography5
- healthcare professionals5
- material scientists5
- neutron community5
- plant researchers5
- postdocs5
- rare disease patients representatives4
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Curators4
- Laboratory technicians4
- PI4
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
- Postgraduate students4
- Veterinarians4
- chemists4
- facility staff4
- industry4
- postgrad4
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- Author
- Bérénice Batut73
- Helena Rasche61
- Saskia Hiltemann42
- Anton Nekrutenko28
- Yvan Le Bras28
- Subina Mehta26
- Anthony Bretaudeau23
- The Carpentries23
- Anne Fouilloux21
- Björn Grüning19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Mehmet Tekman17
- Marie Josse15
- Nicola Soranzo15
- Cristóbal Gallardo14
- Pratik Jagtap14
- Wendi Bacon14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- Julia Jakiela13
- Maria Doyle13
- Simon Gladman13
- Wolfgang Maier13
- Anup Kumar12
- James Johnson12
- Katherine Do12
- Melanie Föll12
- Khaled Jum'ah11
- Paul Zierep11
- Pavankumar Videm11
- Simon Bray11
- Fotis E. Psomopoulos10
- Anika Erxleben9
- Avans Hogeschool9
- Praveen Kumar9
- Anne Pajon8
- Diana Chiang Jurado8
- Emma Leith8
- Joachim Wolff8
- Kaivan Kamali8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alexandre Cormier7
- Anna Syme7
- Christopher Barnett7
- Daniel Blankenberg7
- Erwan Corre7
- Florian Christoph Sigloch7
- Jeremy Goecks7
- Junhao Qiu7
- Laura Cooper7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Paulo Cilas Morais Lyra Junior7
- Ray Sajulga7
- Robert Andrews7
- Alex Ostrovsky6
- Andrew Mason6
- Beatriz Serrano-Solano6
- Branka Franicevic6
- Coline Royaux6
- Daniela Schneider6
- Gildas Le Corguillé6
- Marius van den Beek6
- Morgan Howells6
- Philippe Rocca-Serra6
- Polina Polunina6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Dechen Bhuming5
- Diana Pilvar5
- Kellie Snow5
- Korneel Hens5
- Marisa Loach5
- Munazah Andrabi5
- Nick Juty5
- Raphael Mourad5
- Riccardo Massei5
- Saskia Lawson-Tovey5
- Tristan Reynolds5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Andrea Bagnacani4
- Clemens Blank4
- Engy Nasr4
- Florian Heyl4
- Guillaume Gricourt4
- Helge Hecht4
- Hélène Chiapello4
- Ioana Popescu4
- Jean-Loup Faulon4
- Joan Hérisson4
- Kenza Bazi-Kabbaj4
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- Contributor
- Saskia Hiltemann453
- Helena Rasche376
- Björn Grüning326
- Bérénice Batut186
- Nicola Soranzo89
- Anthony Bretaudeau79
- Cristóbal Gallardo79
- Pavankumar Videm64
- Wendi Bacon58
- Martin Čech56
- Niall Beard55
- Armin Dadras47
- Beatriz Serrano-Solano46
- Teresa Müller46
- William Durand43
- Mehmet Tekman42
- Yvan Le Bras41
- Gildas Le Corguillé40
- Melanie Föll35
- Anup Kumar34
- Wolfgang Maier32
- Marius van den Beek30
- Marie Josse29
- Subina Mehta28
- Simon Bray24
- Anne Fouilloux23
- Donny Vrins22
- Maria Doyle22
- Nate Coraor22
- Peter van Heusden22
- Tristan Reynolds21
- Leonid Kostrykin20
- Anton Nekrutenko18
- Bazante Sanders18
- Julia Jakiela18
- Deepti Varshney17
- Khaled Jum'ah17
- Lucille Delisle17
- Petros Kountouris16
- Pratik Jagtap16
- Paul Zierep15
- Delphine Lariviere14
- Diana Chiang Jurado13
- Daniela Schneider12
- David López12
- Marisa Loach12
- Mélanie Petera12
- Timothy J. Griffin12
- Dave Clements11
- Katarzyna Kamieniecka11
- Matthias Bernt11
- Pablo Moreno11
- Stéphanie Robin11
- Simon Gladman10
- Anna Syme9
- Mallory Freeberg9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Kaivan Kamali8
- Verena Moosmann8
- Christopher Barnett7
- Katherine Do7
- Melissa Burke7
- Morgan Howells7
- Paulo Cilas Morais Lyra Junior7
- Clemens Blank6
- Ekaterina Polkh6
- Florian Christoph Sigloch6
- Hans-Rudolf Hotz6
- Alireza Khanteymoori5
- Bert Droesbeke5
- Clea Siguret5
- Fabio Cumbo5
- Linelle Abueg5
- Riccardo Massei5
- Wandrille Duchemin5
- olisand5
- Andrea Bagnacani4
- Coline Royaux4
- Fotis E. Psomopoulos4
- Joachim Wolff4
- Laura Leroi4
- Nadia Goué4
- Natalie Whitaker-Allen4
- Romane LIBOUBAN4
- Solenne Correard4
- Sotiroula Chatzimatthaiou4
- Anika Erxleben3
- Arthur Barreau3
- Eli Chadwick3
- Engy Nasr3
- Enis Afgan3
- Erwan Corre3
- Jasper Ouwerkerk3
- Jennifer Hillman-Jackson3
- Kenza Bazi-Kabbaj3
- Krzysztof Poterlowicz3
- Maria Christina Maniou3
- Martijn Kersloot3
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- e-learning444
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- Associated Training Datasets332
- Associated Workflows308
- Jupyter Notebook (with Solutions)50
- Jupyter Notebook (without Solutions)50
- Quarto/RMarkdown Notebook5
- Data Visualisation (theory) 1
- R basics1
- RNA-seq data package1
- compareMS21
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- Cyprus16
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- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community5
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
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- Active31
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