Training materials
-
Microbial Variant Calling
gmod introduction jbrowse1 microgalaxy prokaryote
-
Genomic Data Visualisation with JBrowse
gmod jbrowse1
-
Using BioImage.IO models for image analysis in Galaxy
Deep learning Image annotation Image segmentation analyses
-
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
Data handling Data management Data sharing introduction
-
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy
Parameter optimisation Validation advanced
-
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
IDR dataset Overlay Rasterisation Spot detection analyses
-
Object tracking using CellProfiler
Isolated object tracking Multi-channel image analyses
-
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
Conversion Multi-channel image Object feature extraction ROI selection analyses
-
Nucleoli segmentation and feature extraction using CellProfiler
Image segmentation Multi-channel image Object feature extraction analyses
-
Voronoi segmentation
Image segmentation Multi-channel image Object counting Overlay Tessellation analyses