Training materials
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Inferring single cell trajectories with Scanpy (Python)
MIGHTS jupyter-notebook paper-replication single-cell-CS-code
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Inferring single cell trajectories with Monocle3 (R)
MIGHTS jupyter-notebook paper-replication rmarkdown-notebook single-cell-CS-code
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Filter, plot, and explore single cell RNA-seq data with Seurat (R)
MIGHTS jupyter-notebook paper-replication rmarkdown-notebook single-cell-CS-code
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Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
MIGHTS jupyter-notebook paper-replication single-cell-CS-code
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Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x MIGHTS jupyter-notebook paper-replication single-cell-CS-code
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RO-Crate in Python
jupyter-notebook ro-crate
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Best practices for workflows in GitHub repositories
jupyter-notebook ro-crate
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Optimizing DNA Sequences for Biological Functions using a DNA LLM
Large Language Model ai-ml elixir gai-llm jupyter-notebook work-in-progress
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Foundational Aspects of Machine Learning using Python
ai-ml elixir jupyter-notebook machine-learning
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Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
Large Language Model ai-ml elixir gai-llm jupyter-notebook